Monday 13 September
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Session 1
Chair: Andrew Turberfield
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09:45
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Welcome and Introduction
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10:00
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Keynote: Programming robots, patterns and cells with DNA
Fritz Simmel, Technical University of Munich, Germany
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11:00
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Break
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11:15
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Development of a Robust, Highly Processive and Fast DNA Origami Rotary Motor, Monitored by Defocused Imaging of Gold Nanorods (Track C - Eligible for a Prize)
Haggai Shapira, Breveruos Sheheade, Samrat Basak, Ofir Perel, Mary Popov, Meitar Uralevich, Ahmad Rabia and Eyal Nir
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11:30
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ENSnano: a 3D modeling software for DNA nanostructures (Track A - Eligible for a Prize)
Nicolas Levy and Nicolas Schabanel
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11:55
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Networking/Social
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12:10
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Break
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Session 2
Chairs: Cody Geary and Dave Doty
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14:45
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Welcome and Introduction
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15:00
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Predicting Minimum Free Energy Structures of Multi-stranded Nucleic Acid Complexes is APX-Hard (Track A)
Anne Condon, Monir Hajiaghayi and Chris Thachuk
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15:25
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Custom crisscross DNA megastructures from permutations of a minimal sequence library (Track B - Eligible for a Prize)
Chris Wintersinger, Dionis Minev, Anastasia Ershova, Hiroshi Sasaki, Gokul Gowri, Jonathan Berengut, Eduardo Corea-Dilbert, Peng Yin and William Shih
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15:50
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Community announcements: (i) The Art of Molecular Programming (ii) Interchange formats
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16:05
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Poster Session A
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17:05
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Molecular Machines from Topological Linkages (Track A)
Keenan Breik, Austin Luchsinger and David Soloveichik
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17:30
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Allosteric linkages that emulate a molecular motor enzyme (Track B)
Tosan Omabegho
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17:55
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Networking / Social
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18:10
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Close
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Tuesday 14 September
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Session 3
Chair: Fritz Simmel
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09:45
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Keynote: Sorting DNA origami on membranes by self-organizing proteins
Petra Schwille, Max Planck Institute for Biochemistry, Germany
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10:45
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A large, square-shaped, DNA origami nanopore with size-selective function on giant vesicle membrane (Track C - Eligible for a Prize)
Shoji Iwabuchi, Ibuki Kawamata, Satoshi Murata and Shin-ichiro Nomura
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11:00
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Poster Session B
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12:00
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Networking
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12:20
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Break
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Session 4
Chairs: Pekka Orponen and Matt Patitz
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15:00
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Optimizing CpG spatial distribution with DNA origami for Th1-polarized therapeutic vaccination (Track B)
Yang Zeng, Olivia Young, Chris Wintersinger, Frances Anastassacos, James MacDonald, Maxence Dellacherie, Haiqing Bai, Amanda Graveline, Andyna Vernet, Melinda Sanchez, Derin Keskin, Catherine Wu, David Mooney, Ick Chan Kwon, Ju Hee Ryu and William Shih
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15:25
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Parallel Pairwise Operations on Data Stored in DNA: Sorting, Shifting and Searching (Track A)
Tonglin Chen, Arnav Solanki and Marc Riedel
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15:50
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Simulating 3-symbol Turing machines with SIMD||DNA (Track C)
David Doty and Aaron Ong
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16:05
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Break
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16:20
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Keynote: Title to be confirmed
Michael Brenner, Harvard University, USA
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17:20
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Break
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17:35
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Processive RNA polymerization and promoter recognition in an RNA World (Track B - Eligible for a Prize)
Razvan Cojocaru and Peter Unrau
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18:00
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Rational design of aptamer switches with programmable pH response (Track B - Eligible for a Prize)
Ian Thompson, Liwei Zheng and H. Tom Soh
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18:25
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Social / Networking
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18:40
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Close
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Wednesday 15 September
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Session 5
Chair: Luca Cardelli
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09:45
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Programmed mechano-chemical coupling in reaction-diffusion active matter (Track B)
Anis Senoussi, Jean-Christophe Galas and André Estevez-Torres
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10:10
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Programmable Ultrasensitive Molecular Amplifier for compartmentalized single-enzyme analysis (Track C)
Guillaume Gines, Adèle Dramé-Maigné, Nicolas Larrouy, Paula Uittenbogaard and Yannick Rondelez
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10:25
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Autonomous unsupervised learning for a spiking neuron implemented in DNA strand displacement reactions (Track C - Eligible for a Prize)
Jakub Fil, Neil Dalchau and Dominique Chu
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10:40
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Rapid DNA four-way branch migration with a bulge in the toeholds (Track B)
Wooli Bae, Guy-Bart Stan and Thomas Ouldridge
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11:05
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Poster Session C
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12:05
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Networking
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12:25
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Break
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Session 6
Chairs: Matt Lakin and Andrew Phillips
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15:00
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Reactamole: Functional Reactive Molecular Programming (Track A - Eligible for a Prize)
Titus Klinge, James Lathrop, Peter-Michael Osera and Allison Rogers
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15:25
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Programming and Training Rate-Independent Chemical Reaction Networks (Track B - Eligible for a Prize)
Marko Vasic, Cameron Chalk, Austin Luchsinger, Sarfraz Khurshid and David Soloveichik
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15:50
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ppsim: A software package for efficiently simulating and visualizing population protocols (Track B - Eligible for a Prize)
David Doty and Eric Severson
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16:15
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Break
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16:30
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Social DNA Nanorobots (Track B - Eligible for a Prize)
Ming Yang and John Reif
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16:55
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Robust Digital Molecular Design of Binarized Neural Networks (Track A - Eligible for a Prize)
Johannes Linder, Yuan-Jyue Chen, David Wong, Georg Seelig, Luis Ceze and Karin Strauss
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17:20
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Break
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17:35
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Keynote: Simulating Reaction Networks together with Digital Protocols
Luca Cardelli, University of Oxford, UK
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18:35
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Networking / Social
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18:50
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Close
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Thursday 16 September
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Session 7
Chair: Damien Woods
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09:45
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Keynote: Viral Geometry: A Novel Perspective on Virus Assembly and Disassembly with Applications in Virus Nanotechnology
Reidun Twarock, University of York, UK
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10:45
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Break
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10:55
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Programmed antibody dynamics on antigen patterns explored via DNA origami and Markov modeling (Track B)
Ian Hoffecker, Alan Shaw, Viktoria Sorokina, Ioanna Smyrlaki and Björn Högberg
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11:20
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Directed non-cooperative tile assembly is decidable (Track A)
Damien Regnault and Pierre-Étienne Meunier
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11:45
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Poster Session D
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12:45
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Networking
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13:00
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Break
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Session 8
Chairs: Andrew Turberfield and Anne Condon
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15:00
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Improved lower and upper bounds on the tile complexity of uniquely self-assembling a thin rectangle non-cooperatively in 3D (Track A - Eligible for a Prize)
Scott Summers, David Furcy and Logan Withers
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15:25
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Self-Replication via Tile Self-Assembly (Track A - Eligible for a Prize)
Matthew Patitz, Daniel Hader and Andrew Alseth
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Break
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16:05
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Small tile sets that compute while solving mazes (Track A - Eligible for a Prize)
Matthew Cook, Tristan Stérin and Damien Woods
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16:30
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Computing properties of thermodynamic binding networks: An integer programming approach (Track A - Eligible for a Prize)
David Haley and David Doty |
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16:55
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Break
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17:10
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Keynote: Tulip Award Winner
Chengde Mao, Purdue University, USA
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18:10
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Conference Awards, Presentations (Announcements)
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18:40
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End of Conference
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